Items where Author is "de Vargas, Colomban"

Article

Morard, R, Darling, KF, Weiner, AKM, Hassenrück, C, Vanni, C, Cordier, T, Henry, N, Greco, M, Vollmar, NM, Milivojević, T, Rahman, SN, Siccha, M, Meilland, J, Jonkers, L, Quillévéré, F, Escarguel, G, Douady, CJ, de Garidel‐Thoron, T, de Vargas, C and Kucera, M (2024) The global genetic diversity of planktonic foraminifera reveals the structure of cryptic speciation in plankton. Biological Reviews. doi:10.1111/brv.13065

Cordier, T, Angeles, IB, Henry, N, Lejzerowicz, F, Berney, C, Morard, R, Brandt, A, Cambon-Bonavita, MA, Guidi, L, Lombard, F, Arbizu, PM, Massana, R, Orejas, C, Poulain, J, Smith, CR, Wincker, P, Arnaud-Haond, S, Gooday, AJ, de Vargas, C and Pawlowski, J (2022) Patterns of eukaryotic diversity from the surface to the deep-ocean sediment. Science Advances, 8(5). doi:10.1126/sciadv.abj9309

Morard, R, Füllberg, A, Brummer, GJA, Greco, M, Jonkers, L, Wizemann, A, Weiner, AKM, Darling, K, Siccha, M, Ledevin, R, Kitazato, H, de Garidel-Thoron, T, de Vargas, C and Kucera, M (2019) Genetic and morphological divergence in the warm-water planktonic foraminifera genus Globigerinoides. PLOS ONE, 14(12). e0225246. doi:10.1371/journal.pone.0225246

Morard, R, Garet-Delmas, MJ, Mahé, F, Romac, S, Poulain, J, Kucera, M and de Vargas, C (2018) Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages. Scientific Reports, 8(1). doi:10.1038/s41598-018-20833-z

Morard, R, Lejzerowicz, F, Darling, KF, Lecroq-Bennet, B, Winther Pedersen, M, Orlando, L, Pawlowski, J, Mulitza, S, de Vargas, C and Kucera, M (2017) Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology. Biogeosciences, 14(11). 2741-2754. doi:10.5194/bg-14-2741-2017

Morard, R, Escarguel, G, Weiner, AKM, André, A, Douady, CJ, Wade, CM, Darling, KF, Ujiié, Y, Seears, HA, Quillévéré, F, de Garidel-Thoron, T, de Vargas, C and Kucera, M (2016) Nomenclature for the nameless: a proposal for an integrative molecular taxonomy of cryptic diversity exemplified by planktonic foraminifera. Systematic Biology, 65(5). 925-940. doi:10.1093/sysbio/syw031

Lima-Mendez, G, Faust, K, Henry, N, Decelle, J, Colin, S, Carcillo, F, Chaffron, S, Ignacio-Espinosa, JC, Roux, S, Vincent, F, Bittner, L, Darzi, Y, Wang, J, Audic, S, Berline, L, Bontempi, G, Cabello, AM, Coppola, L, Cornejo-Castillo, FM, D'Ovidio, F, De Meester, L, Ferrera, I, Garet-Delmas, MJ, Guidi, L, Lara, E, Pesant, S, Royo-Llonch, M, Salazar, G, Sanchez, P, Sebastian, M, Souffreau, C, Dimier, C, Picheral, M, Searson, S, Kandels-Lewis, S, Gorsky, G, Not, F, Ogata, H, Speich, S, Stemmann, L, Weissenbach, J, Wincker, P, Acinas, SG, Sunagawa, S, Bork, P, Sullivan, MB, Karsenti, E, Bowler, C, de Vargas, C and Raes, J (2015) Determinants of community structure in the global plankton interactome. Science, 348(6237). 1262073. doi:10.1126/science.1262073

Villar, E, Farrant, GK, Follows, M, Garczarek, L, Speich, S, Audic, S, Bittner, L, Blanke, B, Brum, JR, Brunet, C, Casotti, R, Chase, A, Dolan, JR, d'Ortenzio, F, Gattuso, JP, Grima, N, Guidi, L, Hill, CN, Jahn, O, Jamet, JL, Le Goff, H, Lepoivre, C, Malviya, S, Pelletier, E, Romagnan, JB, Roux, S, Santini, S, Scalco, E, Schwenck, SM, Tanaka, A, Testor, P, Vannier, T, Vincent, F, Zingone, A, Dimier, C, Picheral, M, Searson, S, Kandels-Lewis, S, Acinas, SG, Bork, P, Boss, E, de Vargas, C, Gorsky, G, Ogata, H, Pesant, S, Sullivan, MB, Sunagawa, S, Wincker, P, Karsenti, E, Bowler, C, Not, F, Hingamp, P and Iudicone, D (2015) Environmental characteristics of Agulhas rings affect interocean plankton transport. Science, 348(6237). 1261447. doi:10.1126/science.1261447

de Vargas, C, Audic, S, Henry, N, Decelle, J, Mahe, F, Logares, R, Lara, E, Berney, C, Le Bescot, N, Probert, I, Carmichael, M, Poulain, J, Romac, S, Colin, S, Aury, JM, Bittner, L, Chaffron, S, Dunthorn, M, Engelen, S, Flegontova, O, Guidi, L, Horak, A, Jaillon, O, Lima-Mendez, G, Luke , J, Malviya, S, Morard, R, Mulot, M, Scalco, E, Siano, R, Vincent, F, Zingone, A, Dimier, C, Picheral, M, Searson, S, Kandels-Lewis, S, Acinas, SG, Bork, P, Bowler, C, Gorsky, G, Grimsley, N, Hingamp, P, Iudicone, D, Not, F, Ogata, H, Pesant, S, Raes, J, Sieracki, ME, Speich, S, Stemmann, L, Sunagawa, S, Weissenbach, J, Wincker, P, Karsenti, E, Boss, E, Follows, M, Karp-Boss, L, Krzic, U, Reynaud, EG, Sardet, C, Sullivan, MB and Velayoudon, D (2015) Eukaryotic plankton diversity in the sunlit ocean. Science, 348(6237). 1261605. doi:10.1126/science.1261605

Morard, R, Darling, KF, Mahé, F, Audic, S, Ujiié, Y, Weiner, AKM, André, A, Seears, HA, Wade, CM, Quillévéré, F, Douady, CJ, Escarguel, G, de Garidel-Thoron, T, Siccha, M, Kucera, M and de Vargas, C (2015) PFR2: a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution. Molecular Ecology Resources, 15(6). 1472-1485. doi:10.1111/1755-0998.12410

Brum, JR, Ignacio-Espinoza, JC, Roux, S, Doulcier, G, Acinas, SG, Alberti, A, Chaffron, S, Cruaud, C, de Vargas, C, Gasol, JM, Gorsky, G, Gregory, AC, Guidi, L, Hingamp, P, Iudicone, D, Not, F, Ogata, H, Pesant, S, Poulos, BT, Schwenck, SM, Speich, S, Dimier, C, Kandels-Lewis, S, Picheral, M, Searson, S, Bork, P, Bowler, C, Sunagawa, S, Wincker, P, Karsenti, E and Sullivan, MB (2015) Patterns and ecological drivers of ocean viral communities. Science, 348(6237). 1261498. doi:10.1126/science.1261498

Sunagawa, S, Coelho, LP, Chaffron, S, Kultima, JR, Labadie, K, Salazar, G, Djahanschiri, B, Zeller, G, Mende, DR, Alberti, A, Cornejo-Castillo, FM, Costea, PI, Cruaud, C, D'Ovidio, F, Engelen, S, Ferrera, I, Gasol, JM, Guidi, L, Hildebrand, F, Kokoszka, F, Lepoivre, C, Lima-Mendez, G, Poulain, J, Poulos, BT, Royo-Llonch, M, Sarmento, H, Vieira-Silva, S, Dimier, C, Picheral, M, Searson, S, Kandels-Lewis, S, Bowler, C, de Vargas, C, Gorsky, G, Grimsley, N, Hingamp, P, Iudicone, D, Jaillon, O, Not, F, Ogata, H, Pesant, S, Speich, S, Stemmann, L, Sullivan, MB, Weissenbach, J, Wincker, P, Karsenti, E, Raes, J, Acinas, SG, Bork, P, Follows, M, Karp-Boss, L, Boss, E, Krzic, U, Reynaud, EG, Sardet, C, Sieracki, M and Velayoudon, D (2015) Structure and function of the global ocean microbiome. Science, 348(6237). 1261359. doi:10.1126/science.1261359

Morard, R, Quillévéré, F, Escarguel, G, de Garidel-Thoron, T, de Vargas, C and Kucera, M (2013) Ecological modeling of the temperature dependence of cryptic species of planktonic Foraminifera in the Southern Hemisphere. Palaeogeography, Palaeoclimatology, Palaeoecology, 391. 13-33. doi:10.1016/j.palaeo.2013.05.011

André, A, Weiner, A, Quillévéré, F, Aurahs, R, Morard, R, Douady, CJ, de Garidel-Thoron, T, Escarguel, G, de Vargas, C and Kucera, M (2013) The cryptic and the apparent reversed: lack of genetic differentiation within the morphologically diverse plexus of the planktonic foraminifer Globigerinoides sacculifer. Paleobiology, 39. 21-39. doi:10.1666/0094-8373-39.1.21

Karsenti, E, Acinas, SG, Bork, P, Bowler, C, de Vargas, C, Raes, J, Sullivan, M, Arendt, D, Benzoni, F, Claverie, JM, Follows, M, Gorsky, G, Hingamp, P, Iudicone, D, Jaillon, O, Kandels-Lewis, S, Krzic, U, Not, F, Ogata, H, Pesant, S, Reynaud, E, Sardet, C, Sieracki, M, Speich, S, Velayoudon, D, Weissenbach, J, Wincker, P and Oceans Consortium (2011) A holistic approach to marine ecosystems biology. PLoS Biology, 9(19). e1001177. doi:10.1371/journal.pbio.1001177