Michellod, D, Bien, T, Birgel, D, Violette, M, Kleiner, M, Fearn, S, Zeidler, C, Gruber-Vodicka, HR, Dubilier, N and Liebeke, M (2023) De novo phytosterol synthesis in animals. Science, 380(6644). 520-526. doi:10.1126/science.add7830
Sogin, EM, Michellod, D, Gruber-Vodicka, HR, Bourceau, P, Geier, B, Meier, DV, Seidel, M, Ahmerkamp, S, Schorn, S, D’Angelo, G, Procaccini, G, Dubilier, N and Liebeke, M (2022) Sugars dominate the seagrass rhizosphere. Nature Ecology & Evolution, 6(7). 866-877. doi:10.1038/s41559-022-01740-z
Franke, M, Geier, B, Hammel, JU, Dubilier, N and Leisch, N (2021) Coming together—symbiont acquisition and early development in deep-sea bathymodioline mussels. Proceedings of the Royal Society B: Biological Sciences, 288(1957). 20211044. doi:10.1098/rspb.2021.1044
Ücker, M, Ansorge, R, Sato, Y, Sayavedra, L, Breusing, C and Dubilier, N (2021) Deep-sea mussels from a hybrid zone on the Mid-Atlantic Ridge host genetically indistinguishable symbionts. The ISME Journal. doi:10.1038/s41396-021-00927-9
Sogin, EM, Kleiner, M, Borowski, C, Gruber-Vodicka, HR and Dubilier, N (2021) Life in the dark: phylogenetic and physiological diversity of chemosynthetic aymbioses. Annual Review of Microbiology, 75(1). 695-718. doi:10.1146/annurev-micro-051021-123130
Sogin, EM, Leisch, N and Dubilier, N (2020) Chemosynthetic symbioses. Current Biology, 30(19). R1137-R1142. doi:10.1016/j.cub.2020.07.050
Assié, A, Leisch, N, Meier, DV, Gruber-Vodicka, HR, Tegetmeyer, HE, Meyerdierks, A, Kleiner, M, Hinzke, T, Joye, S, Saxton, M, Dubilier, N and Petersen, JM (2020) Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria). The ISME Journal, 14(1). 104-122. doi:10.1038/s41396-019-0508-7
Geier, B, Sogin, EM, Michellod, D, Janda, M, Kompauer, M, Spengler, B, Dubilier, N and Liebeke, M (2020) Spatial metabolomics of in situ host–microbe interactions at the micrometre scale. Nature Microbiology. doi:10.1038/s41564-019-0664-6
Rubin-Blum, M, Antony, CP, Sayavedra, L, Martinez-Perez, C, Birgel, D, Peckmann, JL, Wu, YC, Cardenas, P, MacDonald, I, Marcon, Y, Sahling, H, Hentschel, U and Dubilier, N (2019) Fueled by methane: deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts. The ISME Journal. doi:10.1038/s41396-019-0346-7 
Ansorge, R, Romano, S, Sayavedra, L, Porras, MÁG, Kupczok, A, Tegetmeyer, HE, Dubilier, N and Petersen, J (2019) Functional diversity enables multiple symbiont strains to coexist in deep-sea mussels. Nature Microbiology, 4(12). 2487-2497. doi:10.1038/s41564-019-0572-9
Rubin-Blum, M, Dubilier, N and Kleiner, M (2019) Genetic evidence for two carbon fixation pathways (the Calvin-Benson-Bassham cycle and the reverse tricarboxylic acid cycle) in symbiotic and free-living bacteria. mSphere, 4(1). doi:10.1128/mSphere.00394-18
Romero Picazo, D, Dagan, T, Ansorge, R, Petersen, JM, Dubilier, N and Kupczok, A (2019) Horizontally transmitted symbiont populations in deep-sea mussels are genetically isolated. The ISME Journal, 13(12). 2954-2968. doi:10.1038/s41396-019-0475-z
Seah, BKB, Antony, CP, Huettel, B, Zarzycki, J, Schada von Borzyskowski, L, Erb, TJ, Kouris, A, Kleiner, M, Liebeke, M, Dubilier, N and Gruber-Vodicka, HR (2019) Sulfur-oxidizing symbionts without canonical genes for autotrophic CO2 fixation. mBio, 10(3). doi:10.1128/mBio.01112-19
Ponnudurai, R, Kleiner, M, Sayavedra, L, Petersen, JM, Moche, M, Otto, A, Becher, D, Takeuchi, T, Satoh, N, Dubilier, N, Schweder, T and Markert, S (2017) Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis. The ISME Journal, 11(2). 463-477. doi:10.1038/ismej.2016.124
Rubin-Blum, M, Antony, CP, Borowski, C, Sayavedra, L, Pape, T, Sahling, H, Bohrmann, G, Kleiner, M, Redmond, MC, Valentine, DL and Dubilier, N (2017) Short-chain alkanes fuel mussel and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps. Nature Microbiology, 2. 17093. doi:10.1038/nmicrobiol.2017.93
Seah, BKB, Schwaha, T, Volland, JM, Huettel, B, Dubilier, N and Gruber-Vodicka, HR (2017) Specificity in diversity: single origin of a widespread ciliate-bacteria symbiosis. Proceedings of the Royal Society B: Biological Sciences, 284(1858). 20170764. doi:10.1098/rspb.2017.0764
Tavormina, PL, Kellermann, MY, Antony, CP, Tocheva, EI, Dalleska, NF, Jensen, AJ, Valentine, DL, Hinrichs, KU, Jensen, GJ, Dubilier, N and Orphan, VJ (2017) Starvation and recovery in the deep-sea methanotroph Methyloprofundus sedimenti. Molecular Microbiology, 103(2). 242-252. doi:10.1111/mmi.13553
Breusing, C, Biastoch, A, Drews, A, Metaxas, A, Jollivet, D, Vrijenhoek, RC, Bayer, T, Melzner, F, Sayavedra, L, Petersen, JM, Dubilier, N, Schilhabel, MB, Rosenstiel, P and Reusch, TBH (2016) Biophysical and population genetic models predict the presence of “phantom” stepping stones connecting Mid-Atlantic Ridge vent ecosystems. Current Biology, 26(17). 2257-2267. doi:10.1016/j.cub.2016.06.062
Zimmermann, J, Wentrup, C, Sadowski, M, Blazejak, A, Gruber-Vodicka, HR, Kleiner, M, Ott, JA, Cronholm, B, De Wit, P, Erséus, C and Dubilier, N (2016) Closely coupled evolutionary history of ecto- and endosymbionts from two distantly related animal phyla. Molecular Ecology, 25(13). 3203-3223. doi:10.1111/mec.13554
Wippler, J, Kleiner, M, Lott, C, Gruhl, A, Abraham, PE, Giannone, RJ, Young, JC, Hettich, RL and Dubilier, N (2016) Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis. BMC Genomics, 17(1). doi:10.1186/s12864-016-3293-y
Assié, A, Borowski, C, van der Heijden, K, Raggi, L, Geier, B, Leisch, N, Schimak, MP, Dubilier, N and Petersen, JM (2016) A specific and widespread association between deep-sea Bathymodiolus mussels and a novel family of Epsilonproteobacteria. Environmental Microbiology Reports, 8(5). 805-813. doi:10.1111/1758-2229.12442
Sayavedra, L, Kleiner, M, Ponnudurai, R, Wetzel, S, Pelletier, E, Barbe, V, Satoh, N, Shoguchi, E, Fink, D, Breusing, C, Reusch, TBH, Rosenstiel, P, Schilhabel, MB, Becher, D, Schweder, T, Markert, S, Dubilier, N and Petersen, JM (2015) Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels. eLife, 4. doi:10.7554/eLife.07966
Dubilier, N, McFall-Ngai, M and Zhao, L (2015) Create a global microbiome effort. Nature, 526(7575). 631-634.
Schimak, MP, Kleiner, M, Wetzel, S, Liebeke, M, Dubilier, N and Fuchs, BM (2015) MiL-FISH: Multilabeled oligonucleotides for fluorescence in situ hybridization improve visualization of bacterial cells. Applied and Environmental Microbiology, 82(1). 62-70. doi:10.1128/AEM.02776-15
Zimmermann, J, Lott, C, Weber, M, Ramette, A, Bright, M, Dubilier, N and Petersen, JM (2014) Dual symbiosis with co-occurring sulfur-oxidizing symbionts in vestimentiferan tubeworms from a Mediterranean hydrothermal vent. Environmental Microbiology, 16(12). 3638-3656. doi:10.1111/1462-2920.12427
Wentrup, C, Wendeberg, A, Schimak, M, Borowski, C and Dubilier, N (2014) Forever competent: deep-sea bivalves are colonized by their chemosynthetic symbionts throughout their lifetime. Environmental Microbiology, 16(12). 3699-3713. doi:10.1111/1462-2920.12597
Petersen, J and Dubilier, N (2014) Gene swapping in the dead zone. eLife, 3. doi:10.7554/eLife.04600
Beinart, RA, Nyholm, SV, Dubilier, N and Girguis, PR (2014) Intracellular Oceanospirillales inhabit the gills of the hydrothermal vent snail Alviniconcha with chemosynthetic, γ-Proteobacterial symbionts. Environmental Microbiology Reports, 6(6). 656-664. doi:10.1111/1758-2229.12183
Russell, JA, Dubilier, N and Rudgers, JA (2014) Nature's microbiome: introduction. Molecular Ecology, 23(6). 1225-1237. doi:10.1111/mec.12676
Jan, C, Petersen, JM, Werner, J, Teeling, H, Huang, S, Glöckner, FO, Golyshina, OV, Dubilier, N, Golyshin, PN, Jebbar, M and Cambon-Bonavita, MA (2014) The gill chamber epibiosis of deep-sea shrimp Rimicaris exoculata: an in-depth metagenomic investigation and discovery of Zetaproteobacteria. Environmental Microbiology, 16(9). 2723-2738. doi:10.1111/1462-2920.12406
McFall-Ngai, M, Hadfield, MG, Bosch, TCG, Carey, HV, Domazet-Loso, T, Douglas, AE, Dubilier, N, Eberl, G, Fukami, T, Gilbert, SF, Hentschel, U, King, N, Kjelleberg, S, Knoll, AH, Kremer, N, Mazmanian, SK, Metcalf, JL, Nealson, K, Pierce, NE, Rawls, JF, Reid, A, Ruby, EG, Rumpho, M, Sanders, JG, Tautz, D and Wernegreen, JJ (2013) Animals in a bacterial world, a new imperative for the life sciences. Proceedings of the National Academy of Sciences of the United States of America, 110(9). 3229-3236. doi:10.1073/pnas.1218525110
Raggi, L, Schubotz, F, Hinrichs, KU, Dubilier, N and Petersen, JM (2013) Bacterial symbionts of Bathymodiolus mussels and Escarpia tubeworms from Chapopote, an asphalt seep in the southern Gulf of Mexico. Environmental Microbiology, 15(7). 1969-1987. doi:10.1111/1462-2920.12051
Kleiner, M, Young, JC, Shah, M, VerBerkmoes, NC and Dubilier, N (2013) Metaproteomics reveals abundant transposase expression in mutualistic endosymbionts. mBio, 4(3). e00223-13. doi:10.1128/mBio.00223-13
Wentrup, C, Wendeberg, A, Huang, JY, Borowski, C and Dubilier, N (2013) Shift from widespread symbiont infection of host tissues to specific colonization of gills in juvenile deep-sea mussels. The ISME Journal, 7(6). 1244-1247. doi:10.1038/ismej.2013.5
van der Heijden, K, Petersen, JM, Dubilier, N and Borowski, C (2012) Genetic connectivity between North and South Mid-Atlantic Ridge chemosynthetic bivalves and their symbionts. PLoS ONE, 7(7). e39994. doi:10.1371/journal.pone.0039994
Kellermann, MY, Schubotz, F, Elvert, M, Lipp, JS, Birgel, D, Prieto-Mollar, X, Dubilier, N and Hinrichs, KU (2012) Symbiont-host relationships in chemosynthetic mussels: A comprehensive lipid biomarker study. Organic Geochemistry, 43(1). 112-124. doi:10.1016/j.orggeochem.2011.10.005
Wendeberg, A, Zielinski, FU, Borowski, C and Dubilier, N (2011) Expression patterns of mRNAs for methanotrophy and thiotrophy in symbionts of the hydrothermal vent mussel Bathymodiolus puteoserpentis. Isme Journal, 6. 104-112. doi:10.1038/ismej.2011.81
Petersen, JM, Zielinski, FU, Pape, T, Seifert, R, Moraru, C, Amann, R, Hourdez, S, Girguis, PR, Wankel, SD, Barbe, V, Pelletier, E, Fink, D, Borowski, C, Bach, W and Dubilier, N (2011) Hydrogen is an energy source for hydrothermal vent symbioses. Nature, 476. 176-180. doi:10.1038/nature10325
Zielinski, F, Gennerich, HH, Borowski, C, Wenzhöfer, F and Dubilier, N (2011) In situ measurements of hydrogen sulfide, oxygen, and temperature in diffuse fluids of an ultramafic-hosted hydrothermal vent field (Logatchev, 14°45'N, Mid-Atlantic Ridge): Implications for chemosymbiotic bathymodiolin mussels. Geochemistry Geophysics Geosystems, 12. Q0AE04. doi:10.1029/2011GC003632
Hügler, M, Petersen, JM, Dubilier, N, Imhoff, JF and Sievert, SM (2011) Pathways of carbon and energy metabolism of the epibiotic community associated with the deep-sea hydrothermal vent shrimp Rimicaris exoculata. PLoS ONE, 6. doi: 10.1371/journal.pone.0016018
Petersen, JM, Ramette, A, Lott, C, Cambon-Bonavita, MA, Zbinden, M and Dubilier, N (2010) Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma- and epsilonproteobacteria at four Mid-Atlantic Ridge hydrothermal vent fields. Environmental Microbiology, 12(8). 2204-2218. doi:10.1111/j.1462-2920.2009.02129.x
Ruehland, C and Dubilier, N (2010) Gamma- and epsilonproteobacterial ectosymbionts of a shallow-water marine worm are related to deep-sea hydrothermal vent ectosymbionts. Environmental Microbiology Reports, 12. 2312-2326. doi:10.1111/j.1462-2920.2010.02256.x
Verna, C, Ramette, A, Wiklund, H, Dahlgren, TG, Glover, AG, Gaill, F and Dubilier, N (2010) High symbiont diversity in the bone-eating worm Osedax mucofloris from shallow whale-falls in the North Atlantic. Environmental Microbiology, 12(8). 2355-2370. doi:10.1111/j.1462-2920.2010.02299.x
Petersen, JM and Dubilier, N (2009) Methanotrophic symbioses in marine invertebrates. Environmental Microbiology Reports, 1. 319-335. doi:10.1111/j.1758-2229.2009.00081.x
Zielinski, FU, Pernthaler, A, Duperron, S, Raggi, L, Giere, O, Borowski, C and Dubilier, N (2009) Widespread occurrence of an intranuclear bacterial parasite in vent and seep bathymodiolin mussels. Environmental Microbiology, 11. 1150-1167. doi:10.1111/j.1462-2920.2008.01847.x
Lösekann, T, Robador, A, Niemann, H, Knittel, K, Boetius, A and Dubilier, N (2008) Endosymbioses between bacteria and deep-sea siboglinid tubeworms from an Arctic cold seep (Haakon Mosby Mud Volcano, Barents Sea). Environmental Microbiology, 10. 3237-3254. doi:10.1111/j.1462-2920.2008.01712.x
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