Items where Author is "Amann, Rudolf"

Article

Dede, B, Reeves, EP, Walter, M, Bach, W, Amann, R and Meyerdierks, A (2024) Bacterial chemolithoautotrophy in ultramafic plumes along the Mid-Atlantic Ridge. The ISME Journal, 18(1). doi:10.1093/ismejo/wrae165

Miksch, S, Orellana, LH, Oggerin de Orube, M, Vidal-Melgosa, S, Solanki, V, Hehemann, JH, Amann, R and Knittel, K (2024) Taxonomic and functional stability overrules seasonality in polar benthic microbiomes. The ISME Journal, 18(1). doi:10.1093/ismejo/wrad005

Priest, T, Vidal-Melgosa, S, Hehemann, JH, Amann, R and Fuchs, BM (2023) Carbohydrates and carbohydrate degradation gene abundance and transcription in Atlantic waters of the Arctic. ISME Communications, 3(1). doi:10.1038/s43705-023-00324-7

Priest, T, von Appen, WJ, Oldenburg, E, Popa, O, Torres-Valdes, S, Bienhold, C, Metfies, K, Boulton, W, Mock, T, Fuchs, BM, Amann, R, Boetius, A and Wietz, M (2023) Atlantic water influx and sea-ice cover drive taxonomic and functional shifts in Arctic marine bacterial communities. The ISME Journal. doi:10.1038/s41396-023-01461-6

Dede, B, Priest, T, Bach, W, Walter, M, Amann, R and Meyerdierks, A (2023) High abundance of hydrocarbon-degrading Alcanivorax in plumes of hydrothermally active volcanoes in the South Pacific Ocean. The ISME Journal. doi:10.1038/s41396-023-01366-4

Dede, B, Hansen, CT, Neuholz, R, Schnetger, B, Kleint, C, Walker, S, Bach, W, Amann, R and Meyerdierks, A (2022) Niche differentiation of sulfur-oxidizing bacteria (SUP05) in submarine hydrothermal plumes. The ISME Journal. doi:10.1038/s41396-022-01195-x

Miksch, S, Meiners, M, Meyerdierks, A, Probandt, D, Wegener, G, Titschack, J, Jensen, MA, Ellrott, A, Amann, R and Knittel, K (2021) Bacterial communities in temperate and polar coastal sands are seasonally stable. ISME Communications, 1(1). doi:10.1038/s43705-021-00028-w

Vidal-Melgosa, S, Sichert, A, Francis, TB, Bartosik, D, Niggemann, J, Wichels, A, Willats, WGT, Fuchs, BM, Teeling, H, Becher, D, Schweder, T, Amann, R and Hehemann, JH (2021) Diatom fucan polysaccharide precipitates carbon during algal blooms. Nature Communications, 12(1). doi:10.1038/s41467-021-21009-6

Klassen, L, Reintjes, G, Tingley, JP, Jones, DR, Hehemann, JH, Smith, AD, Schwinghamer, TD, Arnosti, C, Jin, L, Alexander, TW, Amundsen, C, Thomas, D, Amann, R, McAllister, TA and Abbott, DW (2021) Quantifying fluorescent glycan uptake to elucidate strain-level variability in foraging behaviors of rumen bacteria. Microbiome, 9(1). doi:10.1186/s40168-020-00975-x

Hahn, CJ, Laso-Pérez, R, Vulcano, F, Vaziourakis, KM, Stokke, R, Steen, IH, Teske, A, Boetius, A, Liebeke, M, Amann, R, Knittel, K and Wegener, G (2020) “Candidatus Ethanoperedens,” a thermophilic genus of Archaea mediating the anaerobic oxidation of ethane. mBio, 11(2). doi:10.1128/mBio.00600-20

Meier, DV, Pjevac, P, Bach, W, Markert, S, Schweder, T, Jamieson, J, Petersen, S, Amann, R and Meyerdierks, A (2019) Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses. Environmental Microbiology, 21(2). 682-701. doi:10.1111/1462-2920.14514

Hehemann, JH, Reintjes, G, Klassen, L, Smith, AD, Ndeh, D, Arnosti, C, Amann, R and Abbott, DW (2019) Single cell fluorescence imaging of glycan uptake by intestinal bacteria. The ISME Journal, 13(7). 1883-1889. doi:10.1038/s41396-019-0406-z

Pjevac, P, Meier, DV, Markert, S, Hentschker, C, Schweder, T, Becher, D, Gruber-Vodicka, HR, Richter, M, Bach, W, Amann, R and Meyerdierks, A (2018) Metaproteogenomic profiling of microbial communities colonizing actively venting hydrothermal chimneys. Frontiers in Microbiology, 9. doi:10.3389/fmicb.2018.00680

Hehemann, JH, Truong, LV, Unfried, F, Welsch, N, Kabisch, J, Heiden, SE, Junker, S, Becher, D, Thürmer, A, Daniel, R, Amann, R and Schweder, T (2017) Aquatic adaptation of a laterally acquired pectin degradation pathway in marine gammaproteobacteria. Environmental Microbiology, 19(6). 2320-2333. doi:10.1111/1462-2920.13726

Meier, DV, Pjevac, P, Bach, W, Hourdez, S, Girguis, PR, Vidoudez, C, Amann, R and Meyerdierks, A (2017) Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents. The ISME Journal, 11(7). 1545-1558. doi:10.1038/ismej.2017.37

Probandt, D, Knittel, K, Tegetmeyer, HE, Ahmerkamp, S, Holtappels, M and Amann, R (2017) Permeability shapes bacterial communities in sublittoral surface sediments. Environmental Microbiology, 19(4). 1584-1599. doi:10.1111/1462-2920.13676

Meier, DV, Bach, W, Girguis, PR, Gruber-Vodicka, HR, Reeves, EP, Richter, M, Vidoudez, C, Amann, R and Meyerdierks, A (2016) Heterotrophic Proteobacteria in the vicinity of diffuse hydrothermal venting. Environmental Microbiology, 18(12). 4348-4368. doi:10.1111/1462-2920.13304

Stagars, MH, Ruff, SE, Amann, R and Knittel, K (2016) High diversity of anaerobic alkane-degrading microbial communities in marine seep sediments based on (1-methylalkyl)succinate synthase genes. Frontiers in Microbiology, 6. doi:10.3389/fmicb.2015.01511

Bizic-Ionescu, M, Zeder, M, Ionescu, D, Orlić, S, Fuchs, BM, Grossart, HP and Amann, R (2015) Comparison of bacterial communities on limnic versus coastal marine particles reveals profound differences in colonization. Environmental Microbiology, 17(10). 3500-3514. doi:10.1111/1462-2920.12466

Rosselló-Móra, R and Amann, R (2015) Past and future species definitions for Bacteria and Archaea. Systematic and Applied Microbiology, 38(4). 209-216. doi:10.1016/j.syapm.2015.02.001

Schleifer, KH, Amann, R and Rosselló-Móra, R (2015) Taxonomy in the age of genomics. Systematic and Applied Microbiology, 38(4). 207-208. doi:10.1016/j.syapm.2015.05.002

Korlević, M, Pop Ristova, P, Garić, R, Amann, R and Orlić, S (2014) Bacterial diversity in the South Adriatic Sea during a strong, deep winter convection year. Applied and Environmental Microbiology, 81(5). 1715-1726. doi:10.1128/AEM.03410-14

Thiele, S, Fuchs, BM, Amann, R and Iversen, MH (2014) Colonization in the photic zone and subsequent changes during sinking determine bacterial community composition in marine snow. Applied and Environmental Microbiology, 81(4). 1463-1471. doi:10.1128/AEM.02570-14

Kleindienst, S, Herbst, FA, Stagars, M, von Netzer, F, von Bergen, M, Seifert, J, Peplies, J, Amann, R, Musat, F, Lueders, T and Knittel, K (2014) Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps. The ISME Journal, 8(10). 2029-2044. doi:10.1038/ismej.2014.51

Kyrpides, NC, Hugenholtz, P, Eisen, JA, Woyke, T, Göker, M, Parker, CT, Amann, R, Beck, BJ, Chain, PSG, Chun, J, Colwell, RR, Danchin, A, Dawyndt, P, Dedeurwaerdere, T, DeLong, EF, Detter, JC, De Vos, P, Donohue, TJ, Dong, XZ, Ehrlich, DS, Fraser, C, Gibbs, R, Gilbert, J, Gilna, P, Glöckner, FO, Jansson, JK, Keasling, JD, Knight, R, Labeda, D, Lapidus, A, Lee, JS, Li, WJ, MA, J, Markowitz, V, Moore, ERB, Morrison, M, Meyer, F, Nelson, KE, Ohkuma, M, Ouzounis, CA, Pace, N, Parkhill, J, Qin, N, Rosselló-Móra, R, Sikorski, J, Smith, D, Sogin, M, Stevens, R, Stingl, U, Suzuki, K, Taylor, D, Tiedje, JM, Tindall, B, Wagner, M, Weinstock, G, Weissenbach, J, White, O, Wang, J, Zhang, L, Zhou, YG, Field, D, Whitman, WB, Garrity, GM and Klenk, HP (2014) Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains. PLoS Biology, 12(8). e1001920. doi:10.1371/journal.pbio.1001920

Winkel, M, Pjevac, P, Kleiner, M, Littmann, S, Meyerdierks, A, Amann, R and Mußmann, M (2014) Identification and activity of acetate-assimilating bacteria in diffuse fluids venting from two deep-sea hydrothermal systems. FEMS Microbiology Ecology, 90(3). 731-746. doi:10.1111/1574-6941.12429

Ruff, SE, Probandt, D, Zinkann, AC, Iversen, MH, Klaas, C, Würzberg, L, Krombholz, N, Wolf-Gladrow, D, Amann, R and Knittel, K (2014) Indications for algae-degrading benthic microbial communities in deep-sea sediments along the Antarctic Polar Front. Deep Sea Research Part II: Topical Studies in Oceanography, 108. 6-16. doi:10.1016/j.dsr2.2014.05.011

Reeves, EP, Yoshinaga, MY, Pjevac, P, Goldenstein, NI, Peplies, J, Meyerdierks, A, Amann, R, Bach, W and Hinrichs, KU (2014) Microbial lipids reveal carbon assimilation patterns on hydrothermal sulfide chimneys. Environmental Microbiology, 16(11). 3515-3532. doi:10.1111/1462-2920.12525

Ruff, SE, Arnds, J, Knittel, K, Amann, R, Wegener, G, Ramette, A and Boetius, A (2013) Microbial communities of deep-sea methane seeps at Hikurangi continental argin (New Zealand). PLoS ONE, 8(9). e72627. doi:10.1371/journal.pone.0072627

van de Vossenberg, J, Woebken, D, Maalcke, WJ, Wessels, HJCT, Dutilh, BE, Kartal, B, Janssen-Megens, EM, Roeselers, G, Yan, J, Speth, D, Gloerich, J, Geerts, W, van der Biezen, E, Pluk, W, Francoijs, KJ, Russ, L, Lam, P, Malfatti, SA, Green Tringe, S, Haaijer, SCM, Op den Camp, HJM, Stunnenberg, HG, Amann, R, Kuypers, MMM and Jetten, MSM (2013) The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium. Environmental Microbiology, 15(5). 1275-1289. doi:10.1111/j.1462-2920.2012.02774.x

Kleindienst, S, Ramette, A, Amann, R and Knittel, K (2012) Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments. Environmental Microbiology, 14. 2689-2710. doi:10.1111/j.1462-2920.2012.02832.x

Salman, V, Amann, R, Shub, DA and Schulz-Vogt, HN (2012) Multiple self-splicing introns in the 16S rRNA genes of giant sulfur bacteria. Proceedings of the National Academy of Sciences of the United States of America, 109(11). 4203-4208. doi:10.1073/pnas.1120192109

Zeder, M, Ellrott, A and Amann, R (2011) Automated Sample Area Definition for High-Throughput Microscopy. Cytometry Part A, 79A(4). 306-310. doi:10.1002/cyto.a.21034

Schauer, R, Røy, H, Augustin, N, Gennerich, HH, Peters, M, Wenzhöfer, F, Amann, R and Meyerdierks, A (2011) Bacterial sulfur cycling shapes microbial communities in surface sediments of an ultramafic hydrothermal vent field. Environmental Microbiology, 13(10). 2633-2648. doi:10.1111/j.1462-2920.2011.02530.x

Moraru, C, Moraru, G, Fuchs, BM and Amann, R (2011) Concepts and software for a rational design of polynucleotide probes. Environmental Microbiology Reports, 3(1). 69-78. doi:10.1111/j.1758-2229.2010.00189.x

Petersen, JM, Zielinski, FU, Pape, T, Seifert, R, Moraru, C, Amann, R, Hourdez, S, Girguis, PR, Wankel, SD, Barbe, V, Pelletier, E, Fink, D, Borowski, C, Bach, W and Dubilier, N (2011) Hydrogen is an energy source for hydrothermal vent symbioses. Nature, 476. 176-180. doi:10.1038/nature10325

Lenk, S, Arnds, J, Zerjatke, K, Musat, N, Amann, R and Mussmann, M (2011) Novel groups of Gammaproteobacteria catalyse sulfur oxidation and carbon fixation in a coastal, intertidal sediment. Environmental Microbiology, 13(3). 758-774. doi:10.1111/j.1462-2920.2010.02380.x

Weber, M, Teeling, H, Huang, S, Waldmann, J, Kassabgy, M, Fuchs, BM, Klindworth, A, Klockow, C, Wichels, A, Gerdts, G, Amann, R and Glöckner, FO (2011) Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics. Isme Journal, 5. 918-928. doi:10.1038/ismej.2010.180

Holler, T, Widdel, F, Knittel, K, Amann, R, Kellermann, MY, Hinrichs, KU, Teske, AP, Boetius, A and Wegener, G (2011) Thermophilic anaerobic oxidation of methane by marine microbial consortia. Isme Journal, 5(12). 1946-1956. doi:10.1038/ismej.2011.77

Salman, V, Amann, R, Girnth, AC, Polerecky, L, Bailey, JV, Hogslund, S, Jessen, GL, Pantoja, S and Schulz-Vogt, HN (2011) A single-cell sequencing approach to the classification of large, vacuolated sulfur bacteria. Systematic and Applied Microbiology, 34(4). 243-259. doi:10.1016/j.syapm.2011.02.001

Simonato, F, Gomez-Pereira, PR, Fuchs, BM and Amann, R (2010) Bacterioplankton diversity and community composition in the Southern Lagoon of Venice. Systematic and Applied Microbiology, 33(3). 128.138. doi:10.1016/j.syapm.2009.12.006

Jogler, C, Niebler, M, Lin, W, Kube, M, Wanner, G, Kolinko, S, Stief, P, Beck, AJ, de Beer, D, Petersen, N, Pan, Y, Amann, R, Reinhardt, R and Schüller, D (2010) Cultivation-independent characterization of 'Candidatus Magnetobacterium bavaricum' via ultrastructural, goechemical, ecological and metagenomic methods. Environmental Microbiology, 12(9). 2466-2478. doi:10.1111/j.1462-2920.2010.02220.x

Arnds, J, Knittel, K, Buck, U, Winkel, M and Amann, R (2010) Development of a 16S rRNA-targeted probe set for Verrucomicrobia and its application for fluorescence in situ hybridization in a humic lake. Systematic and Applied Microbiology, 33(3). 139-148. doi:10.1016/j.syapm.2009.12.005

Gomez-Pereira, PR, Fuchs, BM, Alonso, C, Oliver, MJ, van Beusekom, J and Amann, R (2010) Distinct flavobacterial communities in contrasting water masses of the North Atlantic Ocean. Isme Journal, 4(4). 472-487. doi:10.1038/ismej.2009.142

Serrano, W, Amann, R, Rosselló-Móra, R and Fischer, U (2010) Evalution of the use of multilocus sequence analysis (MLSA) to resolve taxonomic conflicts within the genus Marichromatium. Systematic and Applied Microbiology, 33(3). 116-121. doi:10.1016/J.syapm.2009.12.003

Pena, A, Teeling, H, Huerta-Cepas, J, Santos, F, Yarza, P, Brito-Echeverria, J, Lucio, M, Schmitt-Kopplin, P, Meseguer, I, Schenowitz, C, Dossat, C, Barbe, V, Dopazo, J, Rosselló-Móra, R, Schüler, M, Glöckner, FO, Amann, R, Gabaldon, T and Anton, J (2010) Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains. Isme Journal, 4(7). 882-895. doi:10.1038/ismej.2010.6

Moraru, C, Lam, P, Fuchs, BM, Kuypers, MMM and Amann, R (2010) GeneFISH - an in situ technique for linking gene presence and cell identity in environmental microorganisms. Environmental Microbiology, 12(11). 3057-3073. doi:10.1111/j.1462-2920.2010.02281.x

Schreiber, L, Holler, L, Knittel, K, Meyerdierks, A and Amann, R (2010) Identification of the dominant sulfate-reducing bacterial partner of anaerobic methanotrophs of the ANME-2 clade. Environmental Microbiology, 12(8). 2327-2340. doi:10.1111/j.1462-2920.2010.02275.x

Meyerdierks, A, Kube, M, Kostadinov, I, Teeling, H, Glöckner, FO, Reinhardt, R and Amann, R (2010) Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group. Environmental Microbiology, 12(2). 422-439. doi:10.1111/j.1462-2920.2009.02083.x

Alonso, C, Gomez-Pereira, PR, Ramette, A, Ortega, L, Fuchs, BM and Amann, R (2010) Multilevel analysis of the bacterial diversity along the environmental gradient Rio de la Plata-South Atlantic Ocean. Aquatic Microbial Ecology, 61(1). 57-72. doi:10.3354/ame01439

Yarza, P, Ludwig, W, Euzeby, J, Amann, R, Schleifer, KH, Glöckner, FO and Rosselló-Móra, R (2010) Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses. Systematic and Applied Microbiology, 33(6). 291-299. doi:10.1016/j.syapm.2010.08.001

Amann, R and Fuchs, BM (2008) Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nature Reviews Microbiology, 6. 339-348. doi:10.1038/nrmicro1888

Niemann, H, Lösekann, T, de Beer, D, Elvert, M, Nadalig, T, Knittel, K, Amann, R, Sauter, EJ, Schlüter, M, Klages, M, Foucher, JP and Boetius, A (2006) Novel microbial communities of the Haakon Mosby mud volcano and their role as a methane sink. Nature, 443(5227). 854-858. doi:10.1038/nature05227

Hahnke, RL, Bennke, CM, Fuchs, BM, Mann, AJ, Rhiel, E, Teeling, H, Amann, R and Harder, J (0201) Dilution cultivation of marine heterotrophic bacteria abundant after a spring phytoplankton bloom in the North Sea. Environmental Microbiology, 17(10). 3515-3526. doi:10.1111/1462-2920.12479